About Me
Publications
2016
Samina Raza Abidi; Jafna Cox; Ashraf Abusharekh; Nima Hashemian; Syed Sibte Raza Abidi
A Digital Health System to Assist Family Physicians to Safely Prescribe NOAC Medication Proceedings Article
In: Exploring Complexity in Health: An Interdisciplinary Systems Approach. 26th European Medical Informatics Conference (MIE2016), Munich, pp. 519-523, IOS Press, 2016.
Abstract | Links | BibTeX | Tags: Clinical Decision Support Systems, Clinical Practice Guidelines, Digital Health
@inproceedings{Abidi2016b,
title = {A Digital Health System to Assist Family Physicians to Safely Prescribe NOAC Medication},
author = {Samina Raza Abidi and Jafna Cox and Ashraf Abusharekh and Nima Hashemian and Syed Sibte Raza Abidi},
doi = {10.3233/978-1-61499-678-1-519},
year = {2016},
date = {2016-08-15},
booktitle = {Exploring Complexity in Health: An Interdisciplinary Systems Approach. 26th European Medical Informatics Conference (MIE2016), Munich},
volume = {228},
pages = {519-523},
publisher = {IOS Press},
series = {Studies in Health Technology and Informatics},
abstract = {Atrial Fibrillation (AF) is the most common cardiac arrhythmia. Generally, the therapeutic options for managing AF include the use of anticoagulant drugs that prevent the coagulation of blood. New Oral Anticoagulants (NOACs) are not optimally prescribed to patients, despite their efficacy. In Canada, NOAC medications are not directly available to patients who belong to provincial benefits programs, rather a NOAC special authorization process establishes the eligibility of a patient to receive a NOAC and be paid by the provincial Pharmacare program. This special authorization process is tedious and paper-based which inhibits physicians to prescribe NOAC leading to suboptimal AF care to patients. In this paper, we present a computerized NOAC Authorization Decision Support System (NOAC-ADSS), accessible to physicians to help them (a) determine a patient eligibility for NOAC based on Canadian AF clinical guidelines, and (b) complete the special authorization form. We present a semantic web based system to ontologically model the NOAC eligibility criteria and execute the knowledge to determine a patient NOAC eligibility and dosage},
keywords = {Clinical Decision Support Systems, Clinical Practice Guidelines, Digital Health},
pubstate = {published},
tppubtype = {inproceedings}
}
Hossein Mohammadhassanzadeh; William Van Woensel; Samina Raza Abidi; Syed Sibte Raza Abidi
A Semantic Web-based Approach to Plausible Reasoning for Improving Clinical Knowledge Engineering Proceedings Article
In: IEEE International Conference on Biomedical and Health Informatics, Las Vegas, 2016.
Abstract | BibTeX | Tags: Clinical Decision Support Systems, Plausbile Reasoning, Semantic Web
@inproceedings{Mohammadhassanzadeh2016,
title = {A Semantic Web-based Approach to Plausible Reasoning for Improving Clinical Knowledge Engineering},
author = {Hossein Mohammadhassanzadeh and William Van Woensel and Samina Raza Abidi and Syed Sibte Raza Abidi},
year = {2016},
date = {2016-02-24},
urldate = {2016-02-24},
booktitle = {IEEE International Conference on Biomedical and Health Informatics, Las Vegas},
abstract = {In this paper, we present a semantic web based knowledge engineering approach to extend the coverage of medical knowledge-based systems in order to solve complex medical queries that demand the integration of deterministic and plausible knowledge. We leverage plausible reasoning mechanisms, which exploit associations between the underlying domain-specific data, as well as tentative domain knowledge, to extend the coverage of a medical knowledge base. We demonstrate that Semantic Web technologies, due to their efficient solutions for federated data management and built-in DL-based inferencing methods, offer useful opportunities to support plausible reasoning for medical decision support tasks. We evaluated our multi-strategy medical reasoning approach using real-world medical data. Our results illustrate that plausible reasoning improved the knowledge coverage of the original medical knowledge base by 10-12%, and in turn helped to solve complex disease diagnostic queries.},
keywords = {Clinical Decision Support Systems, Plausbile Reasoning, Semantic Web},
pubstate = {published},
tppubtype = {inproceedings}
}
Borna Jafarpour; Syed Sibte Raza Abidi; Samina Raza Abidi
Exploiting Semantic Web Technologies to Develop OWL-Based Clinical Practice Guideline Execution Engines Journal Article
In: IEEE Journal of Biomedical and Health Informatics, vol. 20, no. 1, pp. 388-398, 2016, ISSN: 2168-2194.
Abstract | Links | BibTeX | Tags: Clinical Decision Support Systems, Clinical Practice Guidelines, OWL, Semantic Web
@article{Jafarpour:IeeeJournalOfBiomedicalAndHealthInformat,
title = {Exploiting Semantic Web Technologies to Develop OWL-Based Clinical Practice Guideline Execution Engines},
author = {Borna Jafarpour and Syed Sibte Raza Abidi and Samina Raza Abidi},
url = {http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=6990486&isnumber=7369993},
doi = {10.1109/JBHI.2014.2383840},
issn = {2168-2194},
year = {2016},
date = {2016-01-01},
journal = {IEEE Journal of Biomedical and Health Informatics},
volume = {20},
number = {1},
pages = {388-398},
abstract = {Computerizing paper-based CPG and then executing them can provide evidence-informed decision support to physicians at the point of care. Semantic web technologies especially Web Ontology Language (OWL) ontologies have been profusely used to represent computerized CPG. Using semantic web reasoning capabilities to execute OWL based computerized CPG unties them from a specific custom-built CPG execution engine and increases their shareability as any OWL reasoner and triple store can be utilized for CPG execution. However, existing semantic web reasoning based CPG execution engines suffer from lack of ability to execute CPG with high levels of expressivity, high cognitive load of computerization of paper-based CPG and updating their computerized versions. In order to address these limitations, we have developed three CPG execution engines based on OWL 1 DL, OWL 2 DL and OWL 2 DL + Semantic Web Rule Language (SWRL). OWL 1 DL serves as the base execution engine capable of executing a wide range of CPG constructs, however for executing highly complex CPG the OWL 2 DL and OWL 2 DL + SWRL offer additional executional capabilities. We evaluated the technical performance and medical correctness of our execution engines using a range of CPG. Technical evaluations show the efficiency of our CPG execution engines in terms of CPU time and validity of the generated recommendation in comparison to existing CPG execution engines. Medical evaluations by domain experts show the validity of the CPG-mediated therapy plans in terms of relevance, safety, and ordering for a wide range of patient scenarios.},
keywords = {Clinical Decision Support Systems, Clinical Practice Guidelines, OWL, Semantic Web},
pubstate = {published},
tppubtype = {article}
}
2015
William Van Woensel; Hossein Mohammadhassanzadeh; Samina Raza Abidi; Syed Sibte Raza Abidi
Multi-Strategy Semantic Web Reasoning for Medical Knowledge Bases Proceedings Article
In: Proceedings of International Workshop on Biomedical Data Mining, Modeling, and Semantic Integration: A Promising Approach to Solving Unmet Medical Needs (BDM2I2015), 2015.
Links | BibTeX | Tags: Health Informatics, Knowledge Based Systems, Ontology, Semantic Web
@inproceedings{DBLP:conf/semweb/WoenselMAA15,
title = {Multi-Strategy Semantic Web Reasoning for Medical Knowledge Bases},
author = {William Van Woensel and Hossein Mohammadhassanzadeh and Samina Raza Abidi and Syed Sibte Raza Abidi},
url = {http://ceur-ws.org/Vol-1428/BDM2I_2015_paper_8.pdf},
year = {2015},
date = {2015-10-11},
booktitle = {Proceedings of International Workshop on Biomedical Data Mining, Modeling, and Semantic Integration: A Promising Approach to Solving Unmet Medical Needs (BDM2I2015)},
keywords = {Health Informatics, Knowledge Based Systems, Ontology, Semantic Web},
pubstate = {published},
tppubtype = {inproceedings}
}
Amina Russell; William Van Woensel; Samina Raza Abidi
The Shared Decision Making Frontier: Managing Non-Critical Chronic Illness by Combining Behavioural & Decision Theory with Online Technology Proceedings Article
In: MEDINFO 2015: eHealth-enabled Health, 2015.
Abstract | Links | BibTeX | Tags: Biomedical Technology Intervention, Choice Architecture, Chronic Illness, Shared Decision Making
@inproceedings{arussell-medinfo15,
title = {The Shared Decision Making Frontier: Managing Non-Critical Chronic Illness by Combining Behavioural & Decision Theory with Online Technology},
author = {Amina Russell and William Van Woensel and Samina Raza Abidi},
url = {http://web.cs.dal.ca/~woensel/paper/The Shared Decision Making Frontier a Feasibility and Usability Study for Managing Non-Critical Chronic Illness by Combining Behavioural & Decision Theory with Online Technology.pdf},
year = {2015},
date = {2015-09-19},
booktitle = {MEDINFO 2015: eHealth-enabled Health},
abstract = {Objective: To determine if shared decisions for managing non-critical chronic illness, made through an online biomedical technology intervention, proves feasible and usable. The technology intervention incorporates behavioural and decision theory to increase patient engagement, and ultimately long term adherence to health behaviour change.
Method: We devised the iheart web intervention as a “proof of concept” in five phases: 1) conceptual, 2) design, 3) application development, 4) testing and 5) study assessment. The implementation incorporates the Vaadin web application framework, Drools, EclipseLink and a MySQL database.
Results and discussion: Two-thirds of the study participants favoured the technology intervention, based on Likert-scale questions from a post-study questionnaire. Qualitative analysis of think aloud feedback, video screen captures and open-ended questions from the post-study questionnaire, uncovered six main areas or themes for improvement.
Conclusion: Online shared decisions for managing a non-critical chronic illness proved feasible and usable through the iheart web intervention. Areas needing improvement have been identified for the next application revision. An efficacy study is recommended as a next step.
},
keywords = {Biomedical Technology Intervention, Choice Architecture, Chronic Illness, Shared Decision Making},
pubstate = {published},
tppubtype = {inproceedings}
}
Method: We devised the iheart web intervention as a “proof of concept” in five phases: 1) conceptual, 2) design, 3) application development, 4) testing and 5) study assessment. The implementation incorporates the Vaadin web application framework, Drools, EclipseLink and a MySQL database.
Results and discussion: Two-thirds of the study participants favoured the technology intervention, based on Likert-scale questions from a post-study questionnaire. Qualitative analysis of think aloud feedback, video screen captures and open-ended questions from the post-study questionnaire, uncovered six main areas or themes for improvement.
Conclusion: Online shared decisions for managing a non-critical chronic illness proved feasible and usable through the iheart web intervention. Areas needing improvement have been identified for the next application revision. An efficacy study is recommended as a next step.
William Van Woensel; Patrice C. Roy; Samina Raza Abidi; Syed Sibte Raza Abidi
A Mobile and Intelligent Patient Diary for Chronic Disease Self-Management Proceedings Article
In: MEDINFO 2015: eHealth-enabled Health - Proceedings of the 15th World Congress on Health and Biomedical Informatics, Sao Paulo, Brazil, pp. 118–122, IOS Press, 2015, ISBN: 978-1-61499-563-0.
Links | BibTeX | Tags: Chronic Disease Management, Mobile Health, Patient Diary, Patient Empowerment, Self-Management
@inproceedings{DBLP:conf/medinfo/WoenselRAA15,
title = {A Mobile and Intelligent Patient Diary for Chronic Disease Self-Management},
author = {William Van Woensel and Patrice C. Roy and Samina Raza Abidi and Syed Sibte Raza Abidi},
url = {http://dx.doi.org/10.3233/978-1-61499-564-7-118},
doi = {10.3233/978-1-61499-564-7-118},
isbn = {978-1-61499-563-0},
year = {2015},
date = {2015-08-23},
booktitle = {MEDINFO 2015: eHealth-enabled Health - Proceedings of the 15th World Congress on Health and Biomedical Informatics, Sao Paulo, Brazil},
pages = {118--122},
publisher = {IOS Press},
keywords = {Chronic Disease Management, Mobile Health, Patient Diary, Patient Empowerment, Self-Management},
pubstate = {published},
tppubtype = {inproceedings}
}
Borna Jafarpour; Samina Raza Abidi; Ahmad Marwan Ahmad; Syed Sibte Raza Abidi
INITIATE: An Intelligent Adaptive Alert Environment Proceedings Article
In: MEDINFO 2015: eHealth-enabled Health - Proceedings of the 15th World Congress on Health and Biomedical Informatics, Sao Paulo, Brazil, pp. 285–289, IOS Press, 2015, ISBN: 978-1-61499-563-0.
Links | BibTeX | Tags: Alert Fatigue, Clinical Decision Support Systems, Knowledge Management
@inproceedings{DBLP:conf/medinfo/JafarpourAAA15,
title = {INITIATE: An Intelligent Adaptive Alert Environment},
author = {Borna Jafarpour and Samina Raza Abidi and Ahmad Marwan Ahmad and Syed Sibte Raza Abidi},
url = {http://dx.doi.org/10.3233/978-1-61499-564-7-285},
doi = {10.3233/978-1-61499-564-7-285},
isbn = {978-1-61499-563-0},
year = {2015},
date = {2015-08-23},
booktitle = {MEDINFO 2015: eHealth-enabled Health - Proceedings of the 15th World Congress on Health and Biomedical Informatics, Sao Paulo, Brazil},
pages = {285--289},
publisher = {IOS Press},
keywords = {Alert Fatigue, Clinical Decision Support Systems, Knowledge Management},
pubstate = {published},
tppubtype = {inproceedings}
}
0000
William Van Woensel; Samina Raza Abidi; Syed Sibte Raza Abidi
Decision Support for Comorbid Conditions via Execution-Time Integration of Clinical Guidelines Using Transaction-based Semantics and Temporal Planning (under review) Journal Article
In: Artificial Intelligence in Medicine, 0000.
BibTeX | Tags: Clinical Decision Support Systems, Clinical Practice Guidelines, Comorbidity
@article{wvw_aiim_21,
title = {Decision Support for Comorbid Conditions via Execution-Time Integration of Clinical Guidelines Using Transaction-based Semantics and Temporal Planning (under review)},
author = {William Van Woensel and Samina Raza Abidi and Syed Sibte Raza Abidi},
journal = {Artificial Intelligence in Medicine},
keywords = {Clinical Decision Support Systems, Clinical Practice Guidelines, Comorbidity},
pubstate = {published},
tppubtype = {article}
}